Publications

Journal articles                                                  
  • Joshi, A., Wang, D.H., Watterson, S., McClean, P.L., Behera, C.K., Sharp. T., Wong-Lin, K.F., Opportunities for multiscale computational modelling of serotonergic drug effects in Alzheimer’s disease (Under revision)

  • Joshi, A., Youssofzadeh, V., Vemana, V., McGinnity, T.M., Prasad, G., and Wong-Lin, "An integrated modelling framework for neural circuits with multiple neuromodulators," Journal of The Royal Society Interface, 14(125), 2017.

       DOI: 10.1098/rsif.2016.0902

       URL: http://rsif.royalsocietypublishing.org/content/14/126/20160902

       (Citations:5, Journal Impact factor: 3.579)                                                                   

 

  • Jalewa, J.*, Joshi, A.*,, McGinnity, T.M., Prasad, G., Wong-Lin, K. and Hölscher, C., "Neural circuit interactions between the dorsal raphe nucleus and the lateral hypothalamus: An experimental and computational study," PLoS ONE, 9(2): e88003, 2014. 

       DOI: 10.1371/journal.pone.0088003

       URL: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088003

       (Citations:22, Journal Impact factor: 2.806)                                                                   

  • Wong-Lin, K., Joshi, A., Prasad, G., and McGinnity, T.M., “Network properties of a computational model of the dorsal raphe nucleus. Neural Networks”, vol. 32, pp. 15-25, 2012.

       DOI: 10.1016/j.neunet.2012.02.009

       URL: http://www.sciencedirect.com/science/article/pii/S089360801200038X

       (Citations:17, Journal Impact factor: 5.287)      

                

  • Joshi, A.*, Rhodes, O.*, Rowley, A., Hopkins, M., Sharp, T., Furber, S., and Wong-Lin, K., " Exploration of how long- and short-range connectivity and neuronal types affect the prefrontal cortex and dorsal raphe circuit dynamics differently" (in preparation). 

         * Joint first author

 

  • Joshi, A.*, Belle, M.D.C.* and Piggins, H.D., “A systematic approach for analysing multiunit activity and understanding the complex drug effects in in-vitro extracellular electrophysiological recordings” (in preparation). 

         * Joint first author

  • Behera, C.K., Joshi, A., Wang, D.H., Sharp, T. and Wong-Lin, K., “Degeneracy in neural circuits of neuromodulators: A computational modelling study”(in preparation).

       

     

       

* Joint first author

Book chapters, dictionary
  • Joshi, A., Belle, M.D.C., Wong-Lin, K. and Piggins, H.D., “Orexin and circadian influences in sleep and psychiatric disorders: a review of experimental and computational modelling studies.” In: Orexins and Sleep: molecular, functional, and clinical aspects, Eds. Sakurai, T., Monti, J.M., and Pandi-Perumal, S.R., Springer International Publishing, pp. 299-322, 2015 (ISBN 978-3-319-23077-1).

       URL: https://link.springer.com/chapter/10.1007/978-3-319-23078-8_16

       (Citations:3)                                                                                                                          

 

  • Piggins, H.D., Belle, M.D.C., Baño-Otálora B., Joshi, A., and Hughes A.T., “Extrinsic and intrinsic regulation of SCN neuronal activity and function.” In: Circadian Clocks, Proceedings of the 30th Anniversary of Sapporo Symposium on Biological Rhythm (July 25-27, 2014), Eds. Ken-ichi Honma and Sato Honma, Hokkaido University Press, Sapporo, Japan, pp. 125-140, 2016 (ISBN 978-4-8329-0371-5).  

       URL: http://hup.gr.jp/modules/zox/index.php?main_page=product_book_info&products_id=922

  • Wong-Lin, K., Wang, DH., Watterson, S., Joshi A., Behera, C.K., McCombe, N., Sharp, T., and Finn, D.P., “Quantitative systems pharmacology dynamics” in A systems medicine dictionary for biomedical researchers (submitted).

 

  • Wong-Lin, K., Wang, DH., Atiya, N., Behera, C.K., Joshi A., “Systems dynamics” in A systems medicine dictionary for biomedical researchers (submitted).

  • Wong-Lin, K.F., Sanchez-Bornot, J.M., McCombe, N., Kaur, D., McClean, P.L., Zou, X., Youssofzadeh, V., Ding, X., Bucholc, M., Yang S., Prasad, G., Coyle, D., Maguire, L.P., Wang, H., Wang, H., Atiya, N.A.A., and Joshi, A.,” Computational Neurology: Computational Modeling Approaches in Dementia” (submitted).

Selected conference proceedings, posters, and abstracts
  • Joshi, A.*, Rhodes, O.*, Sharp, T., Furber, S., and Wong-Lin, K., "Long- and short-range connectivity and neuronal types affect prefrontal dorsal raphe circuit dynamics differently", Neuromatch 2020 (remote conference). 

         * Joint first author

  • Behera, C.K.*, O’Sullivan, R.*, Sanchez-Bornot, J.M., Joshi, A., Prasad, G., Sharp, T., Wong-Lin, K.F., “Revealing the Dynamic Relationship Between Neural Population Activities in Corticoraphe System” (submitted).

         * Joint first author

  • Ezenwe, I., Joshi, A., Wong-Lin, K.F., “Genetic Algorithmic Parameter Optimisation of a Recurrent Spiking Neural Network Model”(submitted).

  • Behera, C.K., Joshi, A., Wang, DH., Sharp, T., Wong-Lin, KF, “Can neuromodulatory neural circuits be degenerate? A theoretical investigation of serotonin-dopamine interaction in conditioning tasks” (submitted).

  • Joshi, A., Rhodes O., Rowley, A., Stokes A.B., Hopkins, M., Sharp, T., Schweimer, J.V., Sharp, T., Wong-Lin, K.F., Furber, S. “A large-scale computational modelling study to investigate serotonergic modulation of cortical columnar dynamics”, 19th Meeting of International Society for Serotonin Research, University College Cork, July 15-19, 2018, Cork, Ireland. 

  • O’Sullivan, R., Tran T., Joshi, A., Behera, C., Wong-Lin, K.F., Pinacho, R., Schweimer, J.V., Bannerman D., Sharp, T., “High-density recording of DRN neurons in-vivo”, 19th Meeting of International Society for Serotonin Research, University College Cork, July 15-19, 2018, Cork, Ireland. 

  • Schweimer, J.V., Behara, C., Joshi, A., Wong-Lin, K.F., Sharp, T., “Large scale monitoring of neural activity in dorsal raphe nucleus of freely moving mice”, 19th Meeting of International Society for Serotonin Research, University College Cork, July 15-19, 2018, Cork, Ireland.

  • Joshi, A., Rhodes O., Rowley, A., Stokes A.B., Hopkins, M., Sharp, T., Wong-Lin, K.F. and Furber, S., “Large-scale network modelling of interactions between prefrontal cortex and dorsal raphe nucleus using SpiNNaker”, nm2 Neuromodulation of Neural Circuits conference 2017, Sep 18-20, 2017, Lusanne/Geneva, Switzerland.   

 

  • Belle, M.D.C., Baño-Otálora B., Joshi, A. and Piggins, H.D., “SCN neurons of Cryptochrome-deficient mice lack circadian timing in intrinsic excitability states and do not gate responses to excitatory input.” In: 15th Biennial Meeting, Society for Research on Biological Rhythms (SRBR), May 21-25, 2016, Palm Harbor, Florida, USA.   

 

  •  Forger, D.B., Myung, J., Belle, M.D.C, Cochran, A., DeWoskin, D., Joshi, A., Stinchcombe, A., Walch, O.J., Takumi, T. and Piggins, H., “Phase organization of clock neurons and its implications for mood disorders,” In: European Biological Rhythms Society (EBRS)/World Congress of Chronobiology (WCC) meeting 2015, Manchester, UK (SC18).

 

  • Joshi, A., McGinnity, T.N., Prasad, G. and Wong-Lin, K., "Computational modelling of serotonin and orexin/hypocretin mediated GIRK and TRP-like currents," In British Neuroscience Association (BNA) meeting 2015, Edinburgh, UK (BNA0543 P2-E-005).   

 

  • Joshi, A., Jalewa, J., McGinnity, T.M., Prasad, G., Hölscher, C. and Wong-Lin, K. "Neural circuit architecture and dynamics of the serotonin-orexin/hypocretin system," Program #604.04, Society for Neuroscience meeting 2013, San Diego, California, USA. (Nanosymposium talk). 

  

  • Joshi A., Wong-Lin K., McGinnity T.M. and Prasad G., "A mathematical model to explore the interdependence between the serotonin and orexin/hypocretin systems," in Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE, 2011, pp. 7270-7273.

       (Citations:11)                                                             

© 2020 by Alok Joshi. All rights reserved.

Research Associate in Data Science and Computational Neuroscience, Ulster University